Class to read and store all the data from the bucky input graph.
Module Contents
Classes
buckyData
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Contains and preprocesses all the data imported from an input graph file. |
Functions
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class bucky.model.data.buckyData(data_dir, fit_cfg, force_diag_Aij=False, hist_length=101, force_historical_end_dow=4, force_start_date=None)[source]
Contains and preprocesses all the data imported from an input graph file.
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N(self)[source]
Total population.
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Nj(self)[source]
Total population per adm2.
Notes
\[N_j = \sum_i N_{ij}\]
- Return type:
numpy.ndarray or cupy.ndarray if using CuPy
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adm0_Ni(self)[source]
Age stratified adm0 population.
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adm0_cum_case_hist(self)[source]
Cumulative cases at adm0.
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adm0_cum_death_hist(self)[source]
Cumulative deaths at adm0.
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adm0_inc_case_hist(self)[source]
Incident cases at adm0.
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adm0_inc_death_hist(self)[source]
Incident deaths at adm0.
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adm1_Nij(self)[source]
Age stratified adm1 populations.
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adm1_Nj(self)[source]
Total adm1 populations.
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adm1_cum_case_hist(self)[source]
Cumulative cases by adm1.
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adm1_cum_death_hist(self)[source]
Cumulative deaths by adm1.
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adm1_inc_case_hist(self)[source]
Incident cases by adm1.
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adm1_inc_death_hist(self)[source]
Incident deaths by adm1.
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sum_adm1(self, adm2_arr, mask=None, cache=False)[source]
DEPRECATED: Return the adm1 sum of a variable defined at the adm2 level using the mapping on the graph.
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bucky.model.data.cached_scatter_add(a, slices, value)[source]
scatter_add() thats cached by joblib.
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bucky.model.data.read_population_tensor(file, return_adm2_ids=False, min_pop_per_bin=1.0)[source]
Read in csv containing binned population data.