bucky.model.main

The main module handling the simulation

Module Contents

Classes

buckyModelCovid

Class that handles one full simulation (both time integration and managing MC states)

Functions

main(args=None)

Main method for a complete simulation called with a set of CLI args

bucky.model.main.SCENARIO_HUB = False[source]
class bucky.model.main.buckyModelCovid(debug=False, sparse_aij=False, t_max=None, graph_file=None, par_file=None, npi_file=None, disable_npi=False, reject_runs=False)[source]

Class that handles one full simulation (both time integration and managing MC states)

calc_lagged_rate(self, var1, var2, lag, mean_days, rollup_func=None)[source]

WIP

load_graph(self, graph_file)[source]

Load the graph data and calculate all the variables that are static across MC runs

postprocess_run(self, sol, seed, columns=None)[source]

Process the output of a run (sol, returned by the integrator) into the requested output vars

reset(self, seed=None, params=None)[source]

Reset the state of the model and generate new inital data from a new random seed

run_multiple(self, n_mc, base_seed=42, out_columns=None, invalid_ret=None)[source]

Perform multiple monte carlos and return their postprocessed results

run_once(self, seed=None)[source]

Perform one complete run of the simulation

save_run(self, sol, base_filename, seed, output_queue)[source]

Postprocess and write to disk the output of run_once

update_params(self, update_dict)[source]

Update the params based of a dict of new values

bucky.model.main.main(args=None)[source]

Main method for a complete simulation called with a set of CLI args