bucky.model.main

The main module handling the simulation.

Module Contents

Classes

buckyModelCovid

Class that handles one full simulation (both time integration and managing MC states).

Functions

main(args=None)

Main method for a complete simulation called with a set of CLI args.

Attributes

SCENARIO_HUB
scen_params

bucky.model.main.SCENARIO_HUB = False

bucky.model.main.scen_params

class bucky.model.main.buckyModelCovid(debug=False, t_max=None, graph_file=None, par_file=None, npi_file=None, disable_npi=False, reject_runs=False, output_dir=None)

Class that handles one full simulation (both time integration and managing MC states).

static calc_lagged_rate(var1, var2, lag, mean_days, rollup_func=None)

WIP.

load_graph(self, graph_file)

Load the graph data and calculate all the variables that are static across MC runs.

postprocess_run(self, sol, seed, columns=None)

Process the output of a run (sol, returned by the integrator) into the requested output vars.

reset(self, params=None)

Reset the state of the model and generate new inital data from a new random seed.

run_multiple(self, n_mc, base_seed=42, out_columns=None, invalid_ret=None)

Perform multiple monte carlos and return their postprocessed results.

run_once(self, seed=None)

Perform one complete run of the simulation.

save_run(self, sol, seed)

Postprocess and write to disk the output of run_once.

static set_seed(seed=None)

Seed all the relevent PRNGS.

update_params(self, update_dict)

Update the params based of a dict of new values.

bucky.model.main.main(args=None)

Main method for a complete simulation called with a set of CLI args.

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