Bucky
ocha
Contents:
Quickstart
Requirements
Installation
Running the Model
Visualizing Results
Lookup Tables
Installation Guide
Downloading Input Datasets
Model Information
Model Description
Model Overview
Model Input and Output
Input
Input Graph
CDC-Recommended Parameters
Output
Column and Index Names
Graph Information
Graph-Level Attributes
Sample Node
Population Data
Case Data
Contact Matrices
Mobility Data
Non-pharmaceutical Interventions
Implementation
Contact-Matrix Based NPIs
Mobility Based NPI
Reproduction Number Based NPI
CLI Interface
bucky.make_input_graph
Named Arguments
bucky.model
Positional Arguments
Named Arguments
bucky.postprocess
Positional Arguments
Named Arguments
bucky.viz.plot
Named Arguments
bucky.viz.map
Named Arguments
Bucky Modules
bucky package
Subpackages
bucky.util package
bucky.viz package
Submodules
bucky.arg_parser_model module
bucky.make_input_graph module
bucky.model module
bucky.npi module
bucky.numerical_libs module
bucky.parameters module
bucky.postprocess module
Module contents
References
Bucky
Docs
»
Index
Edit on GitHub
Index
A
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B
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C
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D
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E
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G
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I
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L
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M
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P
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R
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S
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T
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U
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W
A
add_daily_history() (in module bucky.util.get_historical_data)
age_interp() (bucky.parameters.buckyParams static method)
B
bin_age_csv() (in module bucky.util.util)
bucky
module
bucky.arg_parser_model
module
bucky.make_input_graph
module
bucky.model
module
bucky.npi
module
bucky.numerical_libs
module
bucky.parameters
module
bucky.postprocess
module
bucky.util
module
bucky.util.distributions
module
bucky.util.get_historical_data
module
bucky.util.read_config
module
bucky.util.readable_col_names
module
bucky.util.scoring
module
bucky.util.update_data_repos
module
bucky.util.util
module
bucky.viz
module
bucky.viz.geoid
module
bucky.viz.map
module
bucky.viz.plot
module
buckyParams (class in bucky.parameters)
C
cache_files() (in module bucky.util.util)
calc_beta() (in module bucky.parameters)
calc_derived_params() (bucky.parameters.buckyParams static method)
calc_gamma() (in module bucky.parameters)
calc_Reff() (in module bucky.parameters)
calc_Te() (in module bucky.parameters)
calc_Ti() (in module bucky.parameters)
CI_to_std() (in module bucky.parameters)
compute_population_density() (in module bucky.make_input_graph)
D
date_to_t_int() (in module bucky.util.util)
distribute_data_by_population() (in module bucky.util.update_data_repos)
distribute_mdoc() (in module bucky.util.update_data_repos)
distribute_nyc_data() (in module bucky.util.update_data_repos)
distribute_territory_data() (in module bucky.util.update_data_repos)
distribute_unallocated_csse() (in module bucky.util.update_data_repos)
divide_by_pop() (in module bucky.postprocess)
dotdict (class in bucky.util.util)
E
emit() (bucky.util.util.TqdmLoggingHandler method)
estimate_doubling_time() (bucky.model.SEIR_covid method)
estimate_doubling_time_WHO() (bucky.model.SEIR_covid method)
estimate_IFR() (in module bucky.util.util)
estimate_reporting() (bucky.model.SEIR_covid method)
G
generate_params() (bucky.parameters.buckyParams method)
get_case_history() (in module bucky.make_input_graph)
get_county_population_data() (in module bucky.util.update_data_repos)
get_dates() (in module bucky.viz.map)
get_historical_data() (in module bucky.util.get_historical_data)
get_lex() (in module bucky.make_input_graph)
get_map_data() (in module bucky.viz.map)
get_mobility_data() (in module bucky.make_input_graph)
get_runid() (in module bucky.model)
get_safegraph() (in module bucky.make_input_graph)
get_state_indices() (bucky.model.SEIR_covid method)
get_state_outline() (in module bucky.viz.map)
get_timeseries_data() (in module bucky.util.update_data_repos)
git_pull() (in module bucky.util.update_data_repos)
I
interval() (in module bucky.viz.plot)
IS() (in module bucky.util.scoring)
L
logistic() (in module bucky.util.scoring)
M
make_adm1_maps() (in module bucky.viz.map)
make_map() (in module bucky.viz.map)
make_plots() (in module bucky.viz.plot)
map_np_array() (in module bucky.util.util)
module
bucky
bucky.arg_parser_model
bucky.make_input_graph
bucky.model
bucky.npi
bucky.numerical_libs
bucky.parameters
bucky.postprocess
bucky.util
bucky.util.distributions
bucky.util.get_historical_data
bucky.util.read_config
bucky.util.readable_col_names
bucky.util.scoring
bucky.util.update_data_repos
bucky.util.util
bucky.viz
bucky.viz.geoid
bucky.viz.map
bucky.viz.plot
mPERT_sample() (in module bucky.util.distributions)
P
plot() (in module bucky.viz.plot)
process_csse_data() (in module bucky.util.update_data_repos)
process_usafacts() (in module bucky.util.update_data_repos)
R
read_descartes_data() (in module bucky.make_input_graph)
read_geoid_from_graph() (in module bucky.viz.geoid)
read_lex_data() (in module bucky.make_input_graph)
read_lookup() (in module bucky.viz.geoid)
read_npi_file() (in module bucky.npi)
read_yml() (bucky.parameters.buckyParams static method)
remove_chars() (in module bucky.util.util)
reroll_params() (bucky.parameters.buckyParams method)
rescale_doubling_rate() (bucky.parameters.buckyParams static method)
reset() (bucky.model.SEIR_covid method)
reset_A() (bucky.model.SEIR_covid method)
RHS_func() (bucky.model.SEIR_covid static method)
run_once() (bucky.model.SEIR_covid method)
S
SEIR_covid (class in bucky.model)
SimulationException
smooth_IS() (in module bucky.util.scoring)
T
TqdmLoggingHandler (class in bucky.util.util)
truncnorm() (in module bucky.util.distributions)
U
unpack_cache() (in module bucky.util.util)
update_covid_tracking_data() (in module bucky.util.update_data_repos)
update_repos() (in module bucky.util.update_data_repos)
update_usafacts_data() (in module bucky.util.update_data_repos)
use_cupy() (in module bucky.numerical_libs)
W
WIS() (in module bucky.util.scoring)
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